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Datasets. Publications. News. Web services. Sequence searches. New mailing list. Go to our. Go to. Information. Apicomplexan Protozoa. Kinetoplastid Protozoa. Parasitic Helminths. Bacteria. Parasite Vectors. Viruses. » A GeneDB publication is available to access online! News Data »The Parasite Genomics team are happy to announce that the Taenia solium genome, assembled and annotated by the Taenia solium sequencing consortium, is now publicly available. The genome can be accessed from their ho...

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Reviewed on Nov 5st, 2014
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    ccforum.com BMC Genomics | Full text | An insight into the sialome of Glossina morsitans morsitans

    A subsequent assembly version dated 12/17/2008 was produced by the International Glossina Genomics Initiative (IGGI) Consortium. Both versions are available from http://www.genedb.org webcite . (Throughout the manuscript we will use the name contig or cluster to indicate both contigs and singleto... Read article

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    pnas.org Antigenic diversity is generated by distinct evolutionary mechanisms in African trypanosome species

    Data deposition: The draft genome sequences reported in this paper have been deposited in the European Molecular Biology Laboratory (EMBL) Nucleotide Sequence Database [accession nos. HE575314 – HE575324 and CAEQ01000352 – CAEQ01002824 (Trypanosoma congolense) and HE573017 – HE573027 and CAEX0100... Read article

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    plospathogens.org PLoS Pathogens: Functional Characterisation and Drug Target Validation of a Mitotic Kinesin-13 in Trypanosoma brucei

    Brucei genome sequence database ( http://www.genedb.org ) using Blast to ensure their specificity. The PCR fragments were cloned into the pTrcHisC vector (Invitrogen) using restriction sites BamHI and EcoRI, resulting in the generation of expression constructs with an N-terminally 6×histidine tag... Read article

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    biochemj.org Biochemical Journal (2010) 425, 603-614 - H. Denton, S. Fyffe and T.K. Smith - GDP-Man pyrophosphorylase in Trypanosoma brucei

    EXPERIMENTAL Cloning of the TbGDP-Man PP gene and formation of constructs A putative GDP-Man PP gene was identified in the T. brucei genome database ( http://www.genedb.org ) [ 40 ], using a tBlastN search with the Saccharomyces cerevisiae GDP-Man PP genomic sequence as the query. The ORF (open r... Read article

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    biomedcentral.com BMC Research Notes | Full text | Searching for novel cell cycle regulators in Trypanosoma brucei with an RNA interference screen

    Results Identification of RNAi library inserts RNAi library vector inserts (integrated into the rDNA spacer region of the genome) were PCR-amplified from genomic DNA of clones, sequenced and analysed by BLAST analysis at GeneDB http://www.genedb.org/genedb/tryp/blast.jsp webcite or NCBI http://ww... Read article

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    nar.oxfordjournals.org GeneDB—an annotation database for pathogens

    GeneDB—an annotation database for pathogens Read article

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    hominis.mic.vcu.edu CSBC Cryptosporidium Research - The Genome

    Useful Bioinformatics Tools and Database: Guide to web-based analysis tools KEGG - Kyoto Encyclopedia of Genes and Genomes CryptoDB PlasmoDB ToxoDB GeneDB TigrDB Genbank Refseq Expasy Swissprot EMBL Swissprot PIR PDB PIR-NRL3D PROSITE Pfam 3. Guide to Parasite Genome Information: Parasite Genome ... Read article

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    pberghei.eu RMgmDB - Rodent Malaria genetically modified Parasites - P. berghei

    Falciparum ID’s to the new systematic ID’s as displayed in GeneDB until PlasmoDB have also adopted the new ID’s • Links in GeneDB and PlasmoDB (i.e. phenotype information) to both existing and new mutants in RMgmDB are NOT affected 6 June 2011- Recently a number of new malaria mutant parasites ha... Read article

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    lirmm.fr PlasmoDraft

    PlasmoDraft is a database of Gene Ontology (GO) annotation predictions for the genes of Plasmodium falciparum . It involves both the ~ 60% of genes that lake GO annotation, and the genes that are already annotated in GeneDB . Predictions of PlasmoDraft are based on transcriptome, proteome, and in... Read article

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    lists.w3.org Re: Future of FlyWeb work on Drosophila RDF Data from Kei Cheung on 2009-05-14 (public-semweb-lifesci@w3.org from May 2009)

    These mapping files are currently available from the > openflydata code project: > > http://openflydata.googlecode.com/ > > Specifically, all of the D2RQ maps for FlyBase are under the > trunk/chado svn repository path. They are *not* under the > trunk/flybase repository path -- that is earlier w... Read article

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    wapedia.mobi Wapedia - Wiki: Metabolic network modelling

    1. Beginning steps of areconstruction. 1. 1. Resources. 2. Next steps of the reconstruction. 3. Advantages of a reconstruction. 4. Metabolic network simulation. 4. 1. Extreme Pathways. 4. 2. Elementary mode analysis. 4. 3. Minimal metabolic behaviors(MMBs). 4. 4. Flux balance analysis. Metabolic ... Read article

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    plosbiology.org PLoS Biology: NUP-1 Is a Large Coiled-Coil Nucleoskeletal Protein in Trypanosomes with Lamin-Like Functions

    The author(s) have made the following declarations about their contributions: Conceived and designed the experiments: KND SA PB JDB MN DH JDA MPR MCF. Performed the experiments: KND SA JMH JB MS JB AVR YW. Analyzed the data: KND SA JMH JB MS JB AVR YW PB JDB MN DH JDA MPR MCF. Wrote the paper: KN... Read article

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    users.soe.ucsc.edu MaGnET links

    The Institute for Genomic Research (TIGR) parasite databases The Gene Ontology - a controlled vocabulary to describe gene products RCSB Protein Data Bank - database of three dimensional protein structures ModBase - database of three-dimensional protein models calculated by comparative modelling P... Read article

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    plosone.org PLOS ONE: Insights into SCP/TAPS Proteins of Liver Flukes Based on Large-Scale Bioinformatic Analyses of Sequence Datasets

    Assessment of levels of transcription of genes encoding SCP/TAPS in selected liver flukes Genetic interactions of SCP/TAPS homologues PLOS ONE: an inclusive, peer-reviewed, open-access resource from the PUBLIC LIBRARY OF SCIENCE. Reports of well-performed scientific studies from all disciplines f... Read article

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    onlinelibrary.wiley.com Gene Ontology annotation status of the fission yeast genome: preliminary coverage approaches 100% - Aslett - 2006 - Yeast - Wiley Online Library

    Gene Ontology annotation status of the fission yeast genome: preliminary coverage approaches 100% Dynamic aspects of the Gene Ontology and the associated annotations Gene Ontology implementation Gene Ontology structure Read article

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